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{
lib,
stdenv,
fetchFromGitHub,
cmake,
libcxx,
zlib,
nix-update-script,
}:
stdenv.mkDerivation (finalAttrs: {
pname = "splitcode";
version = "0.31.6";
src = fetchFromGitHub {
owner = "pachterlab";
repo = "splitcode";
tag = "v${finalAttrs.version}";
hash = "sha256-80XrLr6gk398a/JVSpb8j0i2pMEDKn0EnTiSw7cWS2c=";
};
nativeBuildInputs = [ cmake ];
buildInputs = [
libcxx
zlib
];
doCheck = true;
checkPhase = ''
mkdir func_tests
cp $src/func_tests/* ./func_tests/
bash ./func_tests/runtests.sh
'';
passthru.updateScript = nix-update-script { };
meta = {
description = "Tool for flexible, efficient parsing, interpreting, and editing of technical sequences in sequencing reads";
homepage = "https://github.com/pachterlab/splitcode";
license = lib.licenses.bsd2;
# also compiles on macos, but since it seems to return invalid results.
platforms = lib.platforms.linux;
maintainers = with lib.maintainers; [ zimward ];
mainProgram = "splitcode";
badPlatforms = [
# Test hangs indefinitely. See https://github.com/pachterlab/splitcode/issues/31
"aarch64-linux"
];
};
})
|
