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{
lib,
stdenv,
cmake,
fetchFromGitHub,
llvmPackages,
enableSse4_1 ? stdenv.hostPlatform.sse4_1Support,
enableAvx ? stdenv.hostPlatform.avxSupport,
enableAvx2 ? stdenv.hostPlatform.avx2Support,
}:
stdenv.mkDerivation (finalAttrs: {
pname = "kalign";
version = "3.5.1";
src = fetchFromGitHub {
owner = "TimoLassmann";
repo = "kalign";
tag = "v${finalAttrs.version}";
hash = "sha256-wcVzKedd8IFKql+TU4wJ4jEGDPdDfpyC5iGXrPYa0oY=";
};
patches = [
# Allow overriding the hardcoded Homebrew libomp path on macOS and
# restrict the workaround to AppleClang so other compilers fall back
# to the standard OpenMP detection path.
# https://github.com/TimoLassmann/kalign/pull/65
./macos-openmp-config.patch
];
nativeBuildInputs = [
cmake
];
buildInputs = lib.optionals stdenv.cc.isClang [
llvmPackages.openmp
];
cmakeFlags =
# these flags are ON by default
lib.optional (!enableSse4_1) "-DENABLE_SSE=OFF"
++ lib.optional (!enableAvx) "-DENABLE_AVX=OFF"
++ lib.optional (!enableAvx2) "-DENABLE_AVX2=OFF";
doCheck = true;
meta = {
description = "Fast multiple sequence alignment program";
mainProgram = "kalign";
homepage = "https://github.com/TimoLassmann/kalign";
changelog = "https://github.com/TimoLassmann/kalign/releases/tag/v${finalAttrs.version}";
license = lib.licenses.gpl3Plus;
maintainers = with lib.maintainers; [ natsukium ];
platforms = lib.platforms.unix;
};
})
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