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|
{
lib,
stdenv,
fetchurl,
hmmer,
perl,
}:
stdenv.mkDerivation (finalAttrs: {
version = "1.1.1";
pname = "itsx";
src = fetchurl {
url = "https://microbiology.se/sw/ITSx_${finalAttrs.version}.tar.gz";
sha256 = "0lrmy2n3ax7f208k0k8l3yz0j5cpz05hv4hx1nnxzn0c51z1pc31";
};
buildInputs = [
hmmer
perl
];
buildPhase = ''
sed -e "s,profileDB = .*,profileDB = \"$out/share/ITSx_db/HMMs\";," -i ITSx
sed "3 a \$ENV{\'PATH\'}='${hmmer}/bin:'.\"\$ENV{\'PATH\'}\";" -i ITSx
mkdir bin
mv ITSx bin
'';
installPhase = ''
mkdir -p $out/share/doc && cp -a bin $out/
cp *pdf $out/share/doc
cp -r ITSx_db $out/share
'';
meta = {
description = "Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing";
mainProgram = "ITSx";
homepage = "https://microbiology.se/software/itsx/";
license = lib.licenses.gpl3;
maintainers = [ lib.maintainers.bzizou ];
platforms = lib.platforms.unix;
};
})
|
