blob: e31000cebf130df25cc607008a739a9a367ea42e (
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--- a/CMakeLists.txt 2023-02-01 23:55:18.171758209 +0100
+++ b/CMakeLists.txt 2023-02-02 19:32:16.574426531 +0100
@@ -23,25 +23,11 @@
set (VCFEVAL_AVAILABLE 0)
endif()
-execute_process(
- COMMAND ${CMAKE_SOURCE_DIR}/external/make_dependencies.sh
- WORKING_DIRECTORY ${CMAKE_BINARY_DIR}
- RESULT_VARIABLE EXTERNAL_SUCCESS)
-if(NOT "${EXTERNAL_SUCCESS}" STREQUAL "0")
- message(FATAL_ERROR "Building external dependencies has failed")
-endif()
-
-set(Boost_USE_STATIC_LIBS ON) # only find static libs
set(Boost_USE_MULTITHREADED ON)
-set(Boost_USE_STATIC_RUNTIME ON)
# un-break library finding
-set(Boost_NO_BOOST_CMAKE ON)
-set(Boost_NO_SYSTEM_PATHS ON)
-set(BOOST_ROOT ${CMAKE_BINARY_DIR})
-message("Using our own Boost, which was built at ${HAPLOTYPES_SOURCE_DIR}/external/boost_install")
find_package(Boost 1.55.0 COMPONENTS thread iostreams regex unit_test_framework filesystem system program_options REQUIRED)
include_directories(${Boost_INCLUDE_DIRS})
@@ -51,7 +51,8 @@
link_directories (${CMAKE_BINARY_DIR}/lib)
# make sure we use the bundled zlib version
-set(ZLIB_LIBRARIES ${CMAKE_BINARY_DIR}/lib/libz.a)
+# Additional flags for nix, found by trial and error
+set(ZLIB_LIBRARIES -lz -lbz2 -lcurl -lcrypto -llzma)
include_directories (${HAPLOTYPES_SOURCE_DIR}/external/klib)
include_directories (${HAPLOTYPES_SOURCE_DIR}/external/intervaltree)
@@ -84,11 +86,6 @@
${CMAKE_THREAD_LIBS_INIT})
-execute_process(COMMAND git describe --tags --always
- OUTPUT_VARIABLE HAPLOTYPES_VERSION
- WORKING_DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}"
- OUTPUT_STRIP_TRAILING_WHITESPACE
-)
configure_file("${CMAKE_CURRENT_SOURCE_DIR}/src/c++/include/Version.hh.in"
"${CMAKE_BINARY_DIR}/include/Version.hh")
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